RNA therapeutics

platform manager: Prof. Dr. Christian Bär

Medikament auf Basis von RNA – eine mögliche Roadmap

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Innovative Therapeutics based on ribonucleic acid (RNA) have become known to the general public in the context of vaccine development. However, RNA-based vaccines are only one example of their application. In many organ diseases (e.g. lung, heart, liver), altered gene expression signatures are known to influence the progression of the disease. RNA therapy offers a starting point for influencing pathophysiological processes.

 

Targeted RNA-based therapies

Understanding the altered gene expression signatures in the disease is key to developing a targeted RNA-based therapeutic strategy. In particular, the field of medical informatics and bioinformatics is an essential component for identifying important switch molecules and building a bridge between patient data and applied research.

The interlocking of large clinical data volumes, molecular biological data and functional vocational training of an organ dysfunction has been demonstrated in many ways. Molecular RNA structures thus form a prerequisite for the development of novel, targeted RNA therapeutics.

 

Development of a drug based on RNA

The RNA Therapeutics platform will outline a possible pathway for an RNA-based drug from discovery to clinical application. Using bioinformatic modeling, disease-associated RNAs will be selected that can be modulated using various RNA technologies. The RNA therapeutics are transferred into protective encapsulation technologies (nanoparticles), qualitatively verified and transferred into suitable preclinical model systems to investigate their therapeutic safety and efficacy.

Advanced RNA-based analytical methods for determining pharmacokinetic pathways round off the portfolio.

The proof-of-concept process for the development of an RNA-based therapy can be transferred to many other disease indications. In particular, the development of a suitable encapsulation technology can be beneficial here.

Synergies are achieved through the interaction of bioinformatics, in vitro/ex vivo models and the specific requirements of encapsulation technologies. The platform is therefore highly interdisciplinary in nature, with dynamic control for future application models.

A further important development step will be the focus on the production of RNA therapeutics. This platform will serve as a general realization platform for RNA-based therapies. Starting with smaller syntheses, the aim is to make RNA production available in larger quantities and to incorporate it into appropriate therapeutic strategies. Furthermore, the development of specific encapsulation/nanotechnologies will be an important aspect for targeted therapies.

 

Outlook

Based on the results of the RNA therapeutics platform, further research activities in the section of RNA production and targeted nanoparticles will be necessary to optimize RNA-based drugs for therapeutic application. To this end, we are in close contact with other Fraunhofer locations and see convincing potential for a new class of drugs in broad clinical application.

Competence within the platform

  • Library screening and network analysis to identify key RNA factors in fibrosis
  • Bioinformatics to predict sequence-optimized siRNAs or LNAs or modified RNAs (modRNA) for mRNA overexpression
  • Development of a radiomics signature
  • Formulation of RNA therapeutics for administration by inhalation
  • Biofunctionalized polymers with improved biocompatibility and simultaneous functional integration
    • Polyethyleneimine (PEI)-based siRNA formulations
    • Liposomal formulations
    • Silica gel particles

Technologies within the platform

  • Omics pipeline for integrative RNA analysis and pathway-based stratification
  • Microscale thermophoresis (MST) including validation of molecular binding for (nc)RNA inhibitor (match and mismatch, robustness and reproducibility analysis and evaluation; quality control of data (aggregates, sample adsorption, fluorescence fluctuation); Calculation and fitting of binding curves (KD value vs. Hill coefficient)
  • In-vitro multi-organ study (skin, cornea, blood-brain barrier, intestine) to test the biocompatibility of siRNA candidates
  • Ex-vivo tissue sections for safety and efficacy testing of RNA therapeutics and their delivery systems
  • Chromatography-based (HPLC) method for the quantification of RNA therapeutics in body fluids and tissues for the collection of pharmacokinetic (PK) parameters
  • NanoAssemblr® system from Precision Nanosystems at the Fraunhofer ITEM
  • Visual dashboard for the analysis of omics data and as a corresponding decision support tool

Internal platform infrastructure

 GXP – quality assurance according to international standards 

To ensure that the work carried out under the “RNA Technologies” platform is carried out in accordance with internationally recognized quality standards, the Fraunhofer institute has implemented the GXP quality assurance systems.

They include Good Laboratory Practice (GLP), Good Clinical Practice (GCP) and Good Manufacturing Practice (GMP). With their specific scope, these quality systems cover the translational approach in the platform's range of activities. 

Further information about our GXP platform at the Fraunhofer ITEM and our certificates can be found here. 

RNA therapeutics: Ongoing platform projects

Targeted circRNAs for COVID-19 therapy

  • Timeline of SARS-CoV-2 infection in hiPSC-cardiomyocytes
  • RNA sequencing to identify dysregulated circRNAs
  • circRNA modulation after infection in hiPSC-CMs
  • circRNA-based regulation of SARS-CoV-2 infection
  • siRNA targeting of circRNAs for COVID-19 therapy

Human 3D liver model for preclinical testing of innovative active ingredients

  • Analysis of gene expression profiles of different stages of human liver failure for the identification of target structures and relevant biomarkers
  • Established 2D models of human liver cell types for the screening of fibrosis-modulating drugs
  • Cultivation of 3D human liver slices as a validation platform and translational bridge for toxicological and pharmacological evaluation
  • Generation of efficacy data in human liver slices for the thyroid hormone receptor beta agonist resmetirome
  • Validation of GalNAc-modified nanoparticles for loading with RNA active ingredients and increased release in 3D liver tissue

siRNA approaches for sarcoidosis

  • Single-cell analysis of human BAL cells 
  • Computer-aided analysis of transcription factors in T cell subsets 
  • siRNA generation and in vitro evaluation on human BAL cells 
  • Nanoparticle generation for targeted siRNA delivery 
  • In vivo experiments to test the efficacy of intratracheal application of targeted delivery concepts using different nanoparticles/siRNAs 

Your contact persons for RNA therapeutics

Christian Bär

Contact Press / Media

Prof. Dr. Christian Bär

Plattformleitung RNA-Therapeutika

Phone +49 511 5350-120

Sabine Kafert-Kasting

Contact Press / Media

Dr. Sabine Kafert-Kasting

Projektmanagement RNA-Therapeutika

Phone +49 511 5350-363